STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSEEN0143Putative type I toxin efflux outer membrane protein TolC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter. (445 aa)    
Predicted Functional Partners:
PSEEN0145
Putative type I toxin efflux membrane fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
 
 0.948
PSEEN0144
Putative type I toxin efflux ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
  
 0.936
PSEEN3929
Type I secretion membrane fusion protein, HlyD; Function of strongly homologous gene; transporter.
 
 
 0.866
PSEEN3928
Putative multidrug/toxin efflux protein, ATP binding and membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
  
 0.834
PSEEN0140
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.819
PSEEN3925
Putative RTX toxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
 
  
 0.816
PSEEN0138
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.803
aprE
Alkaline protease (aprA) secretion protein aprE; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.766
hasE
Heme acquisition transporter, membrane fusion protein HasE; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.711
PSEEN0139
Putative signal transduction protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
   
 0.656
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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