Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pilNType IV pili biogenesis protein PilN; Function of homologous gene experimentally demonstrated in an other organism; structural protein. (179 aa)    
Predicted Functional Partners:
PSEEN0332
Putative type IV pili biogenesis protein pilP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; structural protein.
 
 
 0.999
PSEEN0330
Putative type IV pili biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; phenotype.
 
 
 0.994
PSEEN0333
Putative type IV pili biogenesis protein PilQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; membrane component.
 
 
 0.991
PSEEN2843
Putative secretion type II protein related to gspD (secretin) protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; membrane component.
 
 
 0.875
PSEEN2330
Putative type II secretion system protein L; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
 
 0.843
PSEEN2845
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.812
aroK
Shikimate-kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.809
pilD
Type IV pili prepilin peptidase PilD/XcpA; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.807
PSEEN1688
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.787
pilJ
Type IV pili methyl-accepting chemotaxis transducer PilJ; Function of strongly homologous gene; enzyme.
  
  
 0.773
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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