Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rtcRSigma-54 dependent transcriptional regulator RtcR; Function of homologous gene experimentally demonstrated in an other organism; regulator. (527 aa)    
Predicted Functional Partners:
PSEEN0615
Conserved hypothetical protein RtcB; Homologs of previously reported genes of unknown function.
 
  
 0.832
PSEEN0410
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.792
PSEEN0616
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.776
PSEEN0614
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.669
PSEEN0708
Putative tyrosine phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
     0.619
PSEEN0709
Putative Lysophospholipase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
     0.603
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.491
creD
Tolerance to colicin E2; Function of strongly homologous gene; phenotype.
  
     0.490
PSEEN2248
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.485
PSEEN3347
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.481
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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