Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PSEEN0615Conserved hypothetical protein RtcB; Homologs of previously reported genes of unknown function. (401 aa)    
Predicted Functional Partners:
PSEEN0616
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.946
PSEEN0614
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.922
rtcR
Sigma-54 dependent transcriptional regulator RtcR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
 0.832
creD
Tolerance to colicin E2; Function of strongly homologous gene; phenotype.
  
     0.578
PSEEN0411
Putative peptide chain release factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
 
  
 0.569
PSEEN0708
Putative tyrosine phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
     0.477
PSEEN0709
Putative Lysophospholipase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
     0.465
PSEEN3597
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
     0.464
PSEEN2248
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.441
creC
Two-component sensor CreC; Function of strongly homologous gene; regulator.
  
     0.439
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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