Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSEEN0640Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (554 aa)    
Predicted Functional Partners:
PSEEN2176
Putative activation/secretion protein, TPS family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
  
  0.822
PSEEN2834
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 
0.646
PSEEN3947
Putative secretion protein, TPS system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
  
 
0.623
PSEEN3180
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.568
PSEEN4310
Putative autotransporter protein with pertactin-type adhesion domains; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
    0.560
PSEEN2177
Putative surface colonization protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; phenotype.
 
 
 0.544
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
       0.542
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.542
PSEEN0638
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.542
PSEEN3028
Putative subtilisin-like serine protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
  
 0.533
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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