Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSEEN0696Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (420 aa)    
Predicted Functional Partners:
PSEEN0695
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.927
PSEEN3270
Putative sensory box protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
 
0.924
PSEEN3057
Putative phosphodiesterase (EAL domain); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
 0.894
PSEEN0085
Putative signal transduction protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
   
 0.861
PSEEN0697
Putative outer membrane lipoprotein (OmpA domain); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; membrane component.
 
  
 0.854
PSEEN1430
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
  
 0.754
PSEEN3203
Putative methylesterase, CheB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
  
 0.638
PSEEN5017
Putative sensory box protein/response regulator (hybrid); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
 
0.628
recC
Exonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Ho [...]
     
 0.582
recB
Exonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Hol [...]
       0.580
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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