STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaCGamma-carboxymuconolactone decarboxylase (CMD); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (130 aa)    
Predicted Functional Partners:
pcaD
3-oxoadipate enol-lactonase II (Beta-ketoadipate enol-lactone hydrolase II); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.999
pcaB
3-carboxy-cis,cis-muconate cycloisomerase (3-carboxymuconate lactonizing enzyme) (CMLE); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.994
catC
Muconolactone delta-isomerase (MIase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the muconolactone Delta-isomerase family.
    
 0.917
PSEEN2030
Putative gamma-carboxymuconolactone decarboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
  
 
0.907
PSEEN1068
Putative 4-carboxymuconolactone decarboxylase pcaC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
  
 
0.906
pcaH
Protocatechuate 3,4-dioxygenase beta chain (3,4-PCD); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.852
pcaG
Protocatechuate 3,4-dioxygenase alpha chain (3,4-PCD); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.840
catJ
3-oxoadipate:succinyl-CoA transferase, subunit B; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.791
pcaT
Dicarboxylic acid transport protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
    0.786
PSEEN2033
Putative hydrolase, alpha/beta fold family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
 0.757
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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