STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livFBranched-chain amino acid ABC transporter, ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ABC transporter superfamily. (233 aa)    
Predicted Functional Partners:
livM
High-affinity branched-chain amino acid transport protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
livH
Branched-chain amino acid ABC transporter, permease protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.995
livK
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.989
PSEEN4915
Branched-chain amino acid ABC transporter, permease protein; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 0.987
PSEEN4916
Branched-chain amino acid ABC transporter, permease protein; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.970
PSEEN4917
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; Function of strongly homologous gene; transporter.
 
 
 0.970
PSEEN0983
Hypothetical protein; No homology to any previously reported sequences.
 
 
 0.929
livG
Branched-chain amino acid ABC transporter, ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
0.928
PSEEN4913
Branched-chain amino acid ABC transporter, ATP-binding protein; Function of strongly homologous gene; enzyme; Belongs to the ABC transporter superfamily.
  
  
 
0.902
PSEEN4890
Putative branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.755
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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