STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allAUreidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source. (167 aa)    
Predicted Functional Partners:
PSEEN2925
Putative insecticidal toxin, SepC/TccC class (part 2); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
  0.962
PSEEN1682
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.932
ureB
Urease, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the urease beta subunit family.
    
 0.905
ureA
Urease gamma subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the urease gamma subunit family.
    
  0.902
ureC
Urease alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
    
  0.902
PSEEN1684
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.869
gcl
Glyoxylate carboligase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the TPP enzyme family.
 
  
 0.860
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
  
 0.855
aceA
Isocitrate lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.810
PSEEN0907
Putative glycerate dehydrogenase HprA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
  0.800
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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