Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSEEN2019Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (377 aa)    
Predicted Functional Partners:
PSEEN2018
Putative carbamoyltransferase, NodU family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
       0.780
PSEEN2016
Hypothetical protein; No homology to any previously reported sequences.
       0.778
PSEEN2017
Putative transporter, LysE family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
       0.773
PSEEN2015
Putative transcriptional regulator, TetR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
       0.418
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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