Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSEEN2196Putative acetyl transferase, GNAT family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. (144 aa)    
Predicted Functional Partners:
PSEEN2197
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.864
purB
Adenylosuccinate lyase; Function of strongly homologous gene; enzyme; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.753
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
     0.694
PSEEN3897
Putative oxidase, FAD-binding; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
     
 0.631
hflD
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.629
PSEEN1266
Putative glycoprotein endopeptidase metalloprotease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.618
nudJ
Putative hydrolase, Nudix family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the Nudix hydrolase family. NudJ subfamily.
       0.599
PSEEN3719
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
      0.571
idh
Isocitrate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the monomeric-type IDH family.
       0.561
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
    0.501
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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