STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspCAspartate aminotransferase; Function of strongly homologous gene; enzyme. (409 aa)    
Predicted Functional Partners:
aruF
Arginine succinyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.916
speA
Arginine decarboxylase, PLP-binding, biosynthetic; Catalyzes the biosynthesis of agmatine from arginine.
  
 
  0.905
PSEEN3557
Putative arginine/lysine/ornithine decarboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
     
 0.903
PSEEN2606
Putative Arginase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the arginase family.
     
 0.902
aruG
Arginine succinyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.900
argH
Argininosuccinate lyase (Arginosuccinase) (ASAL); Function of strongly homologous gene; enzyme.
    
 0.818
arcA
Arginine deiminase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.806
pheA
Bifunctional chorismate mutase/prephenate dehydratase PheA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.603
uppS
Undecaprenyl diphosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.
 
    0.548
ispB
Octaprenyl-diphosphate synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the FPP/GGPP synthase family.
  
  
 0.498
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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