STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bkdB2-oxoisovalerate dehydrogenase, lipoamide acyltransferase component; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (422 aa)    
Predicted Functional Partners:
bkdA1
2-oxoisovalerate dehydrogenase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.999
bkdA2
2-oxoisovalerate dehydrogenase, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.999
lpdV
2-oxoisovalerate dehydrogenase, lipoamide dehydrogenase component; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 0.998
lpd3
Dihydrolipoamide dehydrogenase 3; Function of strongly homologous gene; enzyme.
 0.993
lpd
2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 0.992
sucA
2-oxoglutarate dehydrogenase, E1 component; Function of strongly homologous gene; enzyme.
 0.965
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.960
prpC
Methylcitrate synthase (citrate synthase 2); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the citrate synthase family.
  
 0.954
mmsA-1
Methylmalonate-semialdehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.911
mmsA-2
Methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.911
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.