A0A0R0JBL0 protein (Glycine max) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0R0JBL0

CBFD_NFYB_HMF domain-containing protein. (88 aa)

Predicted Functional Partners:

A0A0R0II66

0.820

K7LS80_SOYBN

0.820

A0A0R0KSZ8

0.751

A0A368UIM7

0.751

I1L726_SOYBN

0.751

I1N371_SOYBN

0.751

TBP1

0.751

A0A0R0JR31

0.683

A0A0R0K8D1

0.683

I1J6S7_SOYBN

0.683

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R0II66	A0A0R0JBL0	A0A0R0II66	A0A0R0JBL0	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.820
A0A0R0II66	A0A0R0JR31	A0A0R0II66	A0A0R0JR31	Uncharacterized protein.	Uncharacterized protein.	0.710
A0A0R0II66	A0A0R0K8D1	A0A0R0II66	A0A0R0K8D1	Uncharacterized protein.	Uncharacterized protein.	0.710
A0A0R0II66	A0A0R0KSZ8	A0A0R0II66	A0A0R0KSZ8	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A0R0II66	A0A368UIM7	A0A0R0II66	A0A368UIM7	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A0R0II66	I1J6S7_SOYBN	A0A0R0II66	I1J6S7	Uncharacterized protein.	Uncharacterized protein.	0.710
A0A0R0II66	I1L726_SOYBN	A0A0R0II66	I1L726	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A0R0II66	I1N371_SOYBN	A0A0R0II66	I1N371	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A0R0II66	TBP1	A0A0R0II66	Q42808	Uncharacterized protein.	TATA-box-binding protein; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II.	0.926
A0A0R0JBL0	A0A0R0II66	A0A0R0JBL0	A0A0R0II66	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.820
A0A0R0JBL0	A0A0R0JR31	A0A0R0JBL0	A0A0R0JR31	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.683
A0A0R0JBL0	A0A0R0K8D1	A0A0R0JBL0	A0A0R0K8D1	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.683
A0A0R0JBL0	A0A0R0KSZ8	A0A0R0JBL0	A0A0R0KSZ8	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.751
A0A0R0JBL0	A0A368UIM7	A0A0R0JBL0	A0A368UIM7	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.751
A0A0R0JBL0	I1J6S7_SOYBN	A0A0R0JBL0	I1J6S7	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.683
A0A0R0JBL0	I1L726_SOYBN	A0A0R0JBL0	I1L726	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.751
A0A0R0JBL0	I1N371_SOYBN	A0A0R0JBL0	I1N371	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.751
A0A0R0JBL0	K7LS80_SOYBN	A0A0R0JBL0	K7LS80	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.820
A0A0R0JBL0	TBP1	A0A0R0JBL0	Q42808	CBFD_NFYB_HMF domain-containing protein.	TATA-box-binding protein; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II.	0.751
A0A0R0JR31	A0A0R0II66	A0A0R0JR31	A0A0R0II66	Uncharacterized protein.	Uncharacterized protein.	0.710