I1LB04_SOYBN protein (Glycine max) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I1LB04_SOYBN

S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. (389 aa)

Predicted Functional Partners:

Q71EW8_SOYBN

0.964

I1KWU9_SOYBN

0.917

I1N9J8_SOYBN

0.917

I1NGH7_SOYBN

0.917

K7KNT9_SOYBN

0.910

A0A0R4J5Z8

0.909

I1JWK3_SOYBN

0.909

I1LXY1_SOYBN

0.909

I1MW49_SOYBN

0.909

I1KRJ0_SOYBN

0.860

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R4J5Z8	I1JWK3_SOYBN	A0A0R4J5Z8	I1JWK3	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0R4J5Z8	I1KWU9_SOYBN	A0A0R4J5Z8	I1KWU9	Uncharacterized protein.	Hcy-binding domain-containing protein.	0.976
A0A0R4J5Z8	I1LB04_SOYBN	A0A0R4J5Z8	I1LB04	Uncharacterized protein.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.909
A0A0R4J5Z8	I1LXY1_SOYBN	A0A0R4J5Z8	I1LXY1	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0R4J5Z8	I1MW49_SOYBN	A0A0R4J5Z8	I1MW49	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0R4J5Z8	I1N9J8_SOYBN	A0A0R4J5Z8	I1N9J8	Uncharacterized protein.	Hcy-binding domain-containing protein.	0.976
A0A0R4J5Z8	I1NGH7_SOYBN	A0A0R4J5Z8	I1NGH7	Uncharacterized protein.	Hcy-binding domain-containing protein.	0.976
A0A0R4J5Z8	K7KNT9_SOYBN	A0A0R4J5Z8	K7KNT9	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0R4J5Z8	Q71EW8_SOYBN	A0A0R4J5Z8	Q71EW8	Uncharacterized protein.	Methionine synthase.	0.900
I1JWK3_SOYBN	A0A0R4J5Z8	I1JWK3	A0A0R4J5Z8	Uncharacterized protein.	Uncharacterized protein.	0.900
I1JWK3_SOYBN	I1KWU9_SOYBN	I1JWK3	I1KWU9	Uncharacterized protein.	Hcy-binding domain-containing protein.	0.981
I1JWK3_SOYBN	I1LB04_SOYBN	I1JWK3	I1LB04	Uncharacterized protein.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.909
I1JWK3_SOYBN	I1LXY1_SOYBN	I1JWK3	I1LXY1	Uncharacterized protein.	Uncharacterized protein.	0.900
I1JWK3_SOYBN	I1MW49_SOYBN	I1JWK3	I1MW49	Uncharacterized protein.	Uncharacterized protein.	0.900
I1JWK3_SOYBN	I1N9J8_SOYBN	I1JWK3	I1N9J8	Uncharacterized protein.	Hcy-binding domain-containing protein.	0.977
I1JWK3_SOYBN	I1NGH7_SOYBN	I1JWK3	I1NGH7	Uncharacterized protein.	Hcy-binding domain-containing protein.	0.976
I1JWK3_SOYBN	K7KNT9_SOYBN	I1JWK3	K7KNT9	Uncharacterized protein.	Uncharacterized protein.	0.900
I1JWK3_SOYBN	Q71EW8_SOYBN	I1JWK3	Q71EW8	Uncharacterized protein.	Methionine synthase.	0.900
I1KRJ0_SOYBN	I1LB04_SOYBN	I1KRJ0	I1LB04	6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.860
I1KWU9_SOYBN	A0A0R4J5Z8	I1KWU9	A0A0R4J5Z8	Hcy-binding domain-containing protein.	Uncharacterized protein.	0.976