STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1M508_SOYBNUncharacterized protein. (419 aa)    
Predicted Functional Partners:
C6SWW8_SOYBN
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.454
I1MLB1_SOYBN
MIF4G domain-containing protein.
    
 0.445
I1N7Z9_SOYBN
MIF4G domain-containing protein.
    
 0.445
I1LMU3_SOYBN
S1 motif domain-containing protein.
   
 0.439
I1MZ01_SOYBN
S1 motif domain-containing protein.
   
 0.439
C6SYQ7_SOYBN
Sm domain-containing protein.
   
 0.432
I1MSQ9_SOYBN
Sm domain-containing protein.
   
 0.432
I1LUI7_SOYBN
Nuclear cap-binding protein subunit 2.
    
 0.418
I1M3Q3_SOYBN
Nuclear cap-binding protein subunit 2.
    
 0.418
A0A0R0HN81
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.406
Your Current Organism:
Glycine max
NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.