I1M6E9_SOYBN protein (Glycine max) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I1M6E9_SOYBN

Uncharacterized protein. (747 aa)

Predicted Functional Partners:

CPX

0.873

CPX-2

0.710

I1L225_SOYBN

0.709

K7L6C1_SOYBN

0.709

K7L6C2_SOYBN

0.709

I1JJP3_SOYBN

0.445

K7M498_SOYBN

0.445

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPX	I1M6E9_SOYBN	P35055	I1M6E9	Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic; Involved in the heme and chlorophyll biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX (By similarity).	Uncharacterized protein.	0.873
CPX-2	I1M6E9_SOYBN	A0A0R0G797	I1M6E9	Uncharacterized protein.	Uncharacterized protein.	0.710
I1JJP3_SOYBN	I1M6E9_SOYBN	I1JJP3	I1M6E9	Uncharacterized protein.	Uncharacterized protein.	0.445
I1L225_SOYBN	I1M6E9_SOYBN	I1L225	I1M6E9	AA_permease_C domain-containing protein.	Uncharacterized protein.	0.709
I1M6E9_SOYBN	CPX	I1M6E9	P35055	Uncharacterized protein.	Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic; Involved in the heme and chlorophyll biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX (By similarity).	0.873
I1M6E9_SOYBN	CPX-2	I1M6E9	A0A0R0G797	Uncharacterized protein.	Uncharacterized protein.	0.710
I1M6E9_SOYBN	I1JJP3_SOYBN	I1M6E9	I1JJP3	Uncharacterized protein.	Uncharacterized protein.	0.445
I1M6E9_SOYBN	I1L225_SOYBN	I1M6E9	I1L225	Uncharacterized protein.	AA_permease_C domain-containing protein.	0.709
I1M6E9_SOYBN	K7L6C1_SOYBN	I1M6E9	K7L6C1	Uncharacterized protein.	AA_permease_C domain-containing protein.	0.709
I1M6E9_SOYBN	K7L6C2_SOYBN	I1M6E9	K7L6C2	Uncharacterized protein.	AA_permease_C domain-containing protein.	0.709
I1M6E9_SOYBN	K7M498_SOYBN	I1M6E9	K7M498	Uncharacterized protein.	Uncharacterized protein.	0.445
K7L6C1_SOYBN	I1M6E9_SOYBN	K7L6C1	I1M6E9	AA_permease_C domain-containing protein.	Uncharacterized protein.	0.709
K7L6C2_SOYBN	I1M6E9_SOYBN	K7L6C2	I1M6E9	AA_permease_C domain-containing protein.	Uncharacterized protein.	0.709
K7M498_SOYBN	I1M6E9_SOYBN	K7M498	I1M6E9	Uncharacterized protein.	Uncharacterized protein.	0.445