K7MRR8_SOYBN protein (Glycine max) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

K7MRR8_SOYBN

RNA_pol_A_bac domain-containing protein. (70 aa)

Predicted Functional Partners:

I1MH26_SOYBN

0.999

C6T3P4_SOYBN

0.998

I1LDU4_SOYBN

0.998

GLYMA_U034000

0.998

I1NGQ5_SOYBN

0.998

K7LFW8_SOYBN

0.998

I1N6N9_SOYBN

0.997

K7MV80_SOYBN

0.997

A0A0R0GQW5

0.996

I1LFY7_SOYBN

0.996

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R0GQW5	C6T3P4_SOYBN	A0A0R0GQW5	C6T3P4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.998
A0A0R0GQW5	GLYMA_U034000	A0A0R0GQW5	I1LK95	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.990
A0A0R0GQW5	I1LDU4_SOYBN	A0A0R0GQW5	I1LDU4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.997
A0A0R0GQW5	I1LFY7_SOYBN	A0A0R0GQW5	I1LFY7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.967
A0A0R0GQW5	I1MH26_SOYBN	A0A0R0GQW5	I1MH26	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
A0A0R0GQW5	I1N6N9_SOYBN	A0A0R0GQW5	I1N6N9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_L_2 domain-containing protein.	0.993
A0A0R0GQW5	I1NGQ5_SOYBN	A0A0R0GQW5	I1NGQ5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.997
A0A0R0GQW5	K7LFW8_SOYBN	A0A0R0GQW5	K7LFW8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.998
A0A0R0GQW5	K7MRR8_SOYBN	A0A0R0GQW5	K7MRR8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_A_bac domain-containing protein.	0.996
A0A0R0GQW5	K7MV80_SOYBN	A0A0R0GQW5	K7MV80	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_L_2 domain-containing protein.	0.993
C6T3P4_SOYBN	A0A0R0GQW5	C6T3P4	A0A0R0GQW5	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
C6T3P4_SOYBN	GLYMA_U034000	C6T3P4	I1LK95	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
C6T3P4_SOYBN	I1LDU4_SOYBN	C6T3P4	I1LDU4	Uncharacterized protein.	Uncharacterized protein.	0.995
C6T3P4_SOYBN	I1LFY7_SOYBN	C6T3P4	I1LFY7	Uncharacterized protein.	Uncharacterized protein.	0.494
C6T3P4_SOYBN	I1MH26_SOYBN	C6T3P4	I1MH26	Uncharacterized protein.	Uncharacterized protein.	0.999
C6T3P4_SOYBN	I1N6N9_SOYBN	C6T3P4	I1N6N9	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.997
C6T3P4_SOYBN	I1NGQ5_SOYBN	C6T3P4	I1NGQ5	Uncharacterized protein.	Uncharacterized protein.	0.995
C6T3P4_SOYBN	K7LFW8_SOYBN	C6T3P4	K7LFW8	Uncharacterized protein.	Uncharacterized protein.	0.543
C6T3P4_SOYBN	K7MRR8_SOYBN	C6T3P4	K7MRR8	Uncharacterized protein.	RNA_pol_A_bac domain-containing protein.	0.998
C6T3P4_SOYBN	K7MV80_SOYBN	C6T3P4	K7MV80	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.997