STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4Y8CK39RRM domain-containing protein. (412 aa)    
Predicted Functional Partners:
A0A4Y8DK38
Nuclear cap-binding protein subunit 2.
    
 0.706
A0A4Y8D2Y4
Uncharacterized protein.
    
 0.703
A0A4Y8DI24
Uncharacterized protein.
    
 0.699
A0A4Y8CTB9
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.692
A0A4Y8DAJ1
Tr-type G domain-containing protein.
   
 0.658
A0A4Y8CSL4
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.657
A0A4Y8D7R8
Uncharacterized protein.
    
  0.650
A0A4Y8CPJ2
RPOL4c domain-containing protein.
    
 0.649
A0A4Y8D967
S1 motif domain-containing protein.
   
 0.649
A0A4Y8DHD7
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.649
Your Current Organism:
Botryotinia calthae
NCBI taxonomy Id: 38488
Other names: B. calthae, Botrytis calthae, Botrytis calthae Hennebert
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.