A0A4Y8CZR2 protein (Botryotinia calthae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Y8CZR2

Nudix hydrolase domain-containing protein. (425 aa)

Predicted Functional Partners:

A0A4Y8CLX4

0.810

A0A4Y8CQA0

0.789

A0A4Y8DKD2

0.737

A0A4Y8CUK2

0.727

A0A4Y8D175

0.727

A0A4Y8D5K4

0.727

LSM4

0.690

A0A4Y8D498

0.678

LSM3

0.668

A0A4Y8DA92

0.641

Your Current Organism:

Botryotinia calthae

NCBI taxonomy Id: 38488
Other names: B. calthae, Botrytis calthae, Botrytis calthae Hennebert

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A4Y8CLX4	A0A4Y8CQA0	A0A4Y8CLX4	A0A4Y8CQA0	Uncharacterized protein.	PAT1 domain-containing protein.	0.977
A0A4Y8CLX4	A0A4Y8CUK2	A0A4Y8CLX4	A0A4Y8CUK2	Uncharacterized protein.	YjeF N-terminal domain-containing protein.	0.965
A0A4Y8CLX4	A0A4Y8CZR2	A0A4Y8CLX4	A0A4Y8CZR2	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.810
A0A4Y8CLX4	A0A4Y8D5K4	A0A4Y8CLX4	A0A4Y8D5K4	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A4Y8CLX4	A0A4Y8DKD2	A0A4Y8CLX4	A0A4Y8DKD2	Uncharacterized protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.999
A0A4Y8CLX4	LSM3	A0A4Y8CLX4	A0A4Y8D964	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.833
A0A4Y8CLX4	LSM4	A0A4Y8CLX4	A0A4Y8CD27	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.892
A0A4Y8CQA0	A0A4Y8CLX4	A0A4Y8CQA0	A0A4Y8CLX4	PAT1 domain-containing protein.	Uncharacterized protein.	0.977
A0A4Y8CQA0	A0A4Y8CUK2	A0A4Y8CQA0	A0A4Y8CUK2	PAT1 domain-containing protein.	YjeF N-terminal domain-containing protein.	0.926
A0A4Y8CQA0	A0A4Y8CZR2	A0A4Y8CQA0	A0A4Y8CZR2	PAT1 domain-containing protein.	Nudix hydrolase domain-containing protein.	0.789
A0A4Y8CQA0	A0A4Y8D5K4	A0A4Y8CQA0	A0A4Y8D5K4	PAT1 domain-containing protein.	Uncharacterized protein.	0.979
A0A4Y8CQA0	A0A4Y8DKD2	A0A4Y8CQA0	A0A4Y8DKD2	PAT1 domain-containing protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.970
A0A4Y8CQA0	LSM3	A0A4Y8CQA0	A0A4Y8D964	PAT1 domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A4Y8CQA0	LSM4	A0A4Y8CQA0	A0A4Y8CD27	PAT1 domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A4Y8CUK2	A0A4Y8CLX4	A0A4Y8CUK2	A0A4Y8CLX4	YjeF N-terminal domain-containing protein.	Uncharacterized protein.	0.965
A0A4Y8CUK2	A0A4Y8CQA0	A0A4Y8CUK2	A0A4Y8CQA0	YjeF N-terminal domain-containing protein.	PAT1 domain-containing protein.	0.926
A0A4Y8CUK2	A0A4Y8CZR2	A0A4Y8CUK2	A0A4Y8CZR2	YjeF N-terminal domain-containing protein.	Nudix hydrolase domain-containing protein.	0.727
A0A4Y8CUK2	A0A4Y8DKD2	A0A4Y8CUK2	A0A4Y8DKD2	YjeF N-terminal domain-containing protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.730
A0A4Y8CUK2	LSM3	A0A4Y8CUK2	A0A4Y8D964	YjeF N-terminal domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.801
A0A4Y8CUK2	LSM4	A0A4Y8CUK2	A0A4Y8CD27	YjeF N-terminal domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.854