A0A4Y8D9F8 protein (Botryotinia calthae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Y8D9F8

TRP_N domain-containing protein. (780 aa)

Predicted Functional Partners:

A0A4Y8D993

0.656

A0A4Y8DA85

0.643

A0A4Y8D2W6

0.625

A0A4Y8DB23

0.607

A0A4Y8DEC2

0.569

A0A4Y8D0K8

0.562

A0A4Y8CG52

0.558

A0A4Y8D7R0

0.554

A0A4Y8CS41

0.541

A0A4Y8DEU4

0.503

Your Current Organism:

Botryotinia calthae

NCBI taxonomy Id: 38488
Other names: B. calthae, Botrytis calthae, Botrytis calthae Hennebert

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Y8CG52	A0A4Y8D0K8	TRP_N domain-containing protein.	Protein kinase domain-containing protein.	0.464
A0A4Y8CG52	A0A4Y8D2W6	TRP_N domain-containing protein.	Uncharacterized protein.	0.662
A0A4Y8CG52	A0A4Y8D993	TRP_N domain-containing protein.	Protein kinase domain-containing protein.	0.815
A0A4Y8CG52	A0A4Y8D9F8	TRP_N domain-containing protein.	TRP_N domain-containing protein.	0.558
A0A4Y8CG52	A0A4Y8DA85	TRP_N domain-containing protein.	Uncharacterized protein.	0.702
A0A4Y8CG52	A0A4Y8DB23	TRP_N domain-containing protein.	Protein kinase domain-containing protein.	0.781
A0A4Y8CG52	A0A4Y8DEC2	TRP_N domain-containing protein.	Uncharacterized protein.	0.710
A0A4Y8CS41	A0A4Y8D2W6	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.553
A0A4Y8CS41	A0A4Y8D9F8	3'-5' exonuclease domain-containing protein.	TRP_N domain-containing protein.	0.541
A0A4Y8CS41	A0A4Y8DA85	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.546
A0A4Y8D0K8	A0A4Y8CG52	Protein kinase domain-containing protein.	TRP_N domain-containing protein.	0.464
A0A4Y8D0K8	A0A4Y8D2W6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.573
A0A4Y8D0K8	A0A4Y8D993	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.815
A0A4Y8D0K8	A0A4Y8D9F8	Protein kinase domain-containing protein.	TRP_N domain-containing protein.	0.562
A0A4Y8D0K8	A0A4Y8DA85	Protein kinase domain-containing protein.	Uncharacterized protein.	0.656
A0A4Y8D0K8	A0A4Y8DB23	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.781
A0A4Y8D0K8	A0A4Y8DEC2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.710
A0A4Y8D2W6	A0A4Y8CG52	Uncharacterized protein.	TRP_N domain-containing protein.	0.662
A0A4Y8D2W6	A0A4Y8CS41	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.553
A0A4Y8D2W6	A0A4Y8D0K8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.573