STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4Y8DGZ4CYCLIN domain-containing protein; Belongs to the cyclin family. (547 aa)    
Predicted Functional Partners:
A0A4Y8DF42
Protein kinase domain-containing protein.
    
 0.992
A0A4Y8DHY0
Protein kinase domain-containing protein.
    
 0.968
A0A4Y8CKW5
Uncharacterized protein.
   
 0.891
A0A4Y8DI82
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.891
A0A4Y8D8I7
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.889
A0A4Y8DGD6
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.853
A0A4Y8CKW4
Uncharacterized protein.
     
 0.834
A0A4Y8CVA0
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
     
 0.831
A0A4Y8D5U4
Protein kinase domain-containing protein.
    
 0.829
A0A4Y8DI24
Uncharacterized protein.
    
 0.827
Your Current Organism:
Botryotinia calthae
NCBI taxonomy Id: 38488
Other names: B. calthae, Botrytis calthae, Botrytis calthae Hennebert
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