STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q91_0634Transcriptional regulatory protein slyA-like, MarR family. (133 aa)    
Predicted Functional Partners:
Q91_0633
Fusaric acid resistance protein conserved region.
 
   
 0.918
Q91_0631
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.820
Q91_1355
AMP-dependent synthetase and ligase.
  
  
 0.523
Q91_0626
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
  
 0.507
Q91_1427
Diguanylate cyclase.
  
  
 0.507
Q91_1780
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
  
  
 0.502
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
 0.495
Q91_1431
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
  
  
 0.461
Q91_0632
Hypothetical protein.
       0.452
Q91_0484
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein.
  
  
 0.442
Your Current Organism:
Cycloclasticus sp. P1
NCBI taxonomy Id: 385025
Other names: C. sp. P1
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