Q91_0739 protein (Cycloclasticus sp. P1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Q91_0739

SpoIVFB, Zn-dependent protease, transmembrane protein. (219 aa)

Predicted Functional Partners:

Q91_0740

0.814

Q91_0738

0.813

Q91_0736

0.806

Q91_0737

0.800

Q91_0734

0.707

Q91_0735

0.705

Q91_1353

0.690

ppnP

0.663

Q91_0733

0.530

Q91_0742

0.493

Your Current Organism:

Cycloclasticus sp. P1

NCBI taxonomy Id: 385025
Other names: C. sp. P1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Q91_0733	Q91_0734	Q91_0733	Q91_0734	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	TPR repeat-containing protein.	0.893
Q91_0733	Q91_0735	Q91_0733	Q91_0735	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Hypothetical protein.	0.578
Q91_0733	Q91_0736	Q91_0733	Q91_0736	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	ATP-dependent helicase YoaA-like protein.	0.599
Q91_0733	Q91_0737	Q91_0733	Q91_0737	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Protease YeaZ-like protein.	0.657
Q91_0733	Q91_0738	Q91_0733	Q91_0738	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Putative translation factor YciO-like protein; Belongs to the SUA5 family.	0.530
Q91_0733	Q91_0739	Q91_0733	Q91_0739	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	SpoIVFB, Zn-dependent protease, transmembrane protein.	0.530
Q91_0733	Q91_0740	Q91_0733	Q91_0740	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.527
Q91_0733	ppnP	Q91_0733	Q91_0741	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.	0.462
Q91_0734	Q91_0733	Q91_0734	Q91_0733	TPR repeat-containing protein.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.893
Q91_0734	Q91_0735	Q91_0734	Q91_0735	TPR repeat-containing protein.	Hypothetical protein.	0.773
Q91_0734	Q91_0736	Q91_0734	Q91_0736	TPR repeat-containing protein.	ATP-dependent helicase YoaA-like protein.	0.742
Q91_0734	Q91_0737	Q91_0734	Q91_0737	TPR repeat-containing protein.	Protease YeaZ-like protein.	0.742
Q91_0734	Q91_0738	Q91_0734	Q91_0738	TPR repeat-containing protein.	Putative translation factor YciO-like protein; Belongs to the SUA5 family.	0.705
Q91_0734	Q91_0739	Q91_0734	Q91_0739	TPR repeat-containing protein.	SpoIVFB, Zn-dependent protease, transmembrane protein.	0.707
Q91_0734	Q91_0740	Q91_0734	Q91_0740	TPR repeat-containing protein.	Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.701
Q91_0734	Q91_0742	Q91_0734	Q91_0742	TPR repeat-containing protein.	Pyruvate kinase II; Belongs to the pyruvate kinase family.	0.456
Q91_0734	ppnP	Q91_0734	Q91_0741	TPR repeat-containing protein.	Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.	0.607
Q91_0735	Q91_0733	Q91_0735	Q91_0733	Hypothetical protein.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.578
Q91_0735	Q91_0734	Q91_0735	Q91_0734	Hypothetical protein.	TPR repeat-containing protein.	0.773
Q91_0735	Q91_0736	Q91_0735	Q91_0736	Hypothetical protein.	ATP-dependent helicase YoaA-like protein.	0.720