STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metR-2HTH-type transcriptional regulator metR; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
metE
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
 
  
 0.708
Q91_0326
Transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.631
Q91_1977
Hypothetical protein.
  
     0.615
Q91_1482
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.539
gltB
Glutamate synthase.
  
  
 0.516
Q91_1355
AMP-dependent synthetase and ligase.
     
 0.442
Q91_0919
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
     
 0.427
Q91_1780
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
   
  
 0.418
Q91_0626
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
   
  
 0.405
Q91_1427
Diguanylate cyclase.
   
  
 0.405
Your Current Organism:
Cycloclasticus sp. P1
NCBI taxonomy Id: 385025
Other names: C. sp. P1
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