STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q91_0978Transcriptional regulator, FNR-like protein. (239 aa)    
Predicted Functional Partners:
Q91_0974
Fnr-like transcriptional activator.
  
     0.762
Q91_0979
ATP synthase F0, subunit B.
   
   0.551
Q91_1431
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
  
 
 0.541
Q91_1997
Cyclic AMP receptor-like protein.
  
   
 0.537
Q91_1780
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
  
 
 0.535
Q91_0626
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
 
 0.532
Q91_1427
Diguanylate cyclase.
  
 
 0.532
Q91_1355
AMP-dependent synthetase and ligase.
  
 
 0.474
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.447
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.444
Your Current Organism:
Cycloclasticus sp. P1
NCBI taxonomy Id: 385025
Other names: C. sp. P1
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