STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fistRNA-dihydrouridine synthase B; Belongs to the transcriptional regulatory Fis family. (82 aa)    
Predicted Functional Partners:
dusB
tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.
  
  
 0.979
dusA
tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
  
  
 0.809
Q91_1431
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
   
 
 0.753
Q91_0626
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
   
 
 0.752
Q91_1427
Diguanylate cyclase.
   
 
 0.752
Q91_1519
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
    
 
 0.733
polI
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
   0.731
Q91_1780
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
    
 
 0.727
Q91_0482
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor.
    
 
 0.624
Q91_0304
Cyclic diguanylate phosphodiesterase domain protein.
   
 
 0.598
Your Current Organism:
Cycloclasticus sp. P1
NCBI taxonomy Id: 385025
Other names: C. sp. P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.