STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF01503.1Arginine deiminase. (418 aa)    
Predicted Functional Partners:
SFD95310.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 0.998
SFD95328.1
Carbamate kinase; Belongs to the carbamate kinase family.
 
  
 0.972
SFD70347.1
N-succinyl-L-ornithine transcarbamylase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
 
 0.856
argH
Argininosuccinate lyase.
     
 0.708
SFD70567.1
Argininosuccinate synthase.
     
 0.702
SFD70276.1
Acetylornithine deacetylase.
  
 
 0.677
SFE03295.1
Hypothetical protein.
    
 0.540
SFE76261.1
Hypothetical protein.
   
    0.537
SFE90006.1
Hypothetical protein.
   
    0.534
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
    
  0.467
Your Current Organism:
Thermophagus xiamenensis
NCBI taxonomy Id: 385682
Other names: Anaerophaga sp. HS1, CGMCC 1.5071, DSM 19012, Marinilabiaceae bacterium HS1, T. xiamenensis, Thermophagus xiamenensis Gao et al. 2013, strain HS1
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