STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF03116.1F5/8 type C domain-containing protein. (721 aa)    
Predicted Functional Partners:
SFF03085.1
Hypothetical protein.
 
     0.861
SFE38347.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.647
SFF03033.1
Alpha-glucosidase.
 
     0.639
SFF03008.1
Hypothetical protein.
 
     0.612
SFD68959.1
Endo-1,4-beta-xylanase.
 
  
 0.586
SFE68422.1
Protein of unknown function.
  
     0.574
SFE06959.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.567
SFE85215.1
Rhamnogalacturonan endolyase.
  
 
  0.548
SFE38061.1
alpha-N-arabinofuranosidase.
  
  
  0.517
SFE38308.1
Hypothetical protein.
 
     0.506
Your Current Organism:
Thermophagus xiamenensis
NCBI taxonomy Id: 385682
Other names: Anaerophaga sp. HS1, CGMCC 1.5071, DSM 19012, Marinilabiaceae bacterium HS1, T. xiamenensis, Thermophagus xiamenensis Gao et al. 2013, strain HS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.