STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lwe0022Putative secreted SH3 domain protein. (274 aa)    
Predicted Functional Partners:
ami
N-acetylmuramoyl-L-alanine amidase, family 2.
 
     0.693
lwe2174
Hypothetical protein.
   
    0.669
lwe0752
NADH-flavin reductase, putative.
   
    0.662
lwe0790
Conserved hypothetical protein.
   
   0.656
lwe2524
Alcohol dehydrogenase, zinc-dependent; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
   
    0.641
lwe0150
Glucose uptake protein.
   
    0.638
lwe0622
Conserved hypothetical protein.
   
    0.638
lwe0743
Sugar phosphotransferasesystem component IIA.
   
    0.638
lwe1280
Putative membrane protein.
  
    0.637
gabD
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
    0.605
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.