Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lwe0022Putative secreted SH3 domain protein. (274 aa)    
Predicted Functional Partners:
ami
N-acetylmuramoyl-L-alanine amidase, family 2.
 
     0.692
lwe1280
Putative membrane protein.
  
     0.632
lwe0023
Transcriptional regulator, GntR family.
       0.461
lwe0024
PTS system, fructose family, IIA component.
       0.440
lwe0025
PTS system, mannose/fructose/sorbose family, IIB component.
       0.440
lwe1240
Phage lysin, putative.
     
 0.423
lwe2231
ABC transporter, permease protein.
  
     0.418
lwe0026
PTS system, mannose/fructose/sorbose family, IIC component.
       0.413
lwe0027
PTS system, mannose/fructose/sorbose family, IID component.
       0.413
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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