Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lwe0028Sugar isomerase domain protein; Belongs to the UPF0309 family. (234 aa)    
Predicted Functional Partners:
lwe0026
PTS system, mannose/fructose/sorbose family, IIC component.
 
     0.780
lwe0027
PTS system, mannose/fructose/sorbose family, IID component.
 
     0.765
lwe0023
Transcriptional regulator, GntR family.
 
     0.720
lwe0025
PTS system, mannose/fructose/sorbose family, IIB component.
 
     0.708
cutC
CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
     0.673
lwe2599
PTS system, lactose/cellobiose specific IIB subunit.
 
     0.658
lwe0024
PTS system, fructose family, IIA component.
       0.650
lwe2597
Phosphotriesterase family protein.
 
     0.617
lwe2598
Putative membrane protein.
 
     0.602
lwe2601
PTS system, IIA component, putative.
 
     0.512
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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