Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
lwe0030PTS system, beta-glucoside-specific, IIABC component. (634 aa)    
Predicted Functional Partners:
ptsH
PTS phosphocarrier protein Hpr.
  
 0.985
lwe0278
PTS system, beta-glucoside-specific IIABC component.
 
 
0.980
lwe0269
PTS system, beta-glucoside-specific IIABC component.
  
 
 0.977
lwe2719
PTS system, beta-glucoside-specific, IIABC component.
  
 
 0.977
fruA
PTS system, fructose-specific, IIABC component.
  
  
 0.935
ptsI
Phosphotransferase system enzyme I; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
  
 
 0.931
licT
Transcription antiterminator.
 
 0.868
treB
PTS system, trehalose-specific, IIBC component.
 
 
0.866
lwe1676
PTS system IIBC protein.
 
 
0.865
lwe2720
Transcription antiterminator, BglG family.
 
 0.865
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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