Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lwe0038Putative lipoprotein. (204 aa)    
Predicted Functional Partners:
lwe1433
Transporter membrane protein, putative.
 
     0.593
lwe1818
Peptidoglycan bound protein (LPXTG motif), putative.
  
     0.587
lisK
Two-component sensor histidine kinase.
 
  
 0.531
lwe1009
Putative membrane protein.
  
     0.527
lwe0039
Accessory gene regulator protein B; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family.
 
     0.521
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
   
   0.497
lwe2249
CBS domain protein.
   
    0.485
lwe2346
CBS domain protein.
   
    0.485
lwe2686
CBS domain protein.
   
    0.485
lwe0862
Peptidoglycan-bound protein (LPXTG motif).
  
     0.484
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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