Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lwe0088Transcriptional regulator, ArsR family. (96 aa)    
Predicted Functional Partners:
lwe2521
Putative membrane protein.
  
  
 0.790
lwe0090
Nitroreductase family protein.
  
  
 0.626
lwe0089
Monooxygenase family protein.
  
    0.571
lwe0087
Pyruvyl-transferases domain protein.
       0.508
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.490
lwe0899
ABC transporter, permease protein, putative.
 
  
 0.435
lwe2180
Transcriptional regulator, AraC family.
 
  
 0.428
lwe2076
Conserved hypothetical protein.
  
     0.421
lwe1696
Homocysteine S-methyltransferase family/methylenetetrahydrofolate reductase family protein.
  
    0.407
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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