Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lwe0089Monooxygenase family protein. (95 aa)    
Predicted Functional Partners:
lwe0090
Nitroreductase family protein.
 
    0.881
lwe0088
Transcriptional regulator, ArsR family.
  
    0.571
lwe0582
Transcriptional regulator, MarR family.
 
    0.558
ltrA
Bacterial low temperature requirement protein A.
 
     0.521
lwe0091
Conserved hypothetical protein.
       0.512
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
    0.446
lwe2130
Nitroreductase family protein; Belongs to the flavin oxidoreductase frp family.
 
    0.427
lwe0915
Nitroreductase family protein; Belongs to the flavin oxidoreductase frp family.
 
    0.413
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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