Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lwe0095Hypothetical protein. (49 aa)    
Predicted Functional Partners:
lwe0094
ROK family protein.
     
 0.751
rpoD
RNA polymerase sigma factor RpoD (Sigma-A); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.679
gltB
Glutamate synthase.
     
 0.657
lwe0651
Flagellar basal-body rod protein, putative; Belongs to the flagella basal body rod proteins family.
   
   0.655
lwe0731
Transcriptional regulator.
  
  
 0.650
lwe2293
Indigoidine synthase A-like protein.
  
  
 0.611
cobB
Transcriptional regulator, Sir2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form.
  
    0.611
lwe1650
Aldehyde-alcohol dehydrogenase protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.589
lwe0023
Transcriptional regulator, GntR family.
  
  
 0.519
lwe0327
Transcriptional regulator, GntR family.
  
  
 0.519
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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