STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lwe0619Polysaccharide deacetylase, putative. (274 aa)    
Predicted Functional Partners:
lwe0489
Glycosyl transferase, group 2 family protein.
  
  
 0.657
lwe0618
Transcriptional regulator, GntR family.
  
    0.537
lwe0093
Chitinase B.
 
   
 0.532
lwe0617
Phage infection protein.
       0.440
pykA
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.429
lwe0479
Type I restriction endonuclease S subunit domain protein.
  
  
 0.418
lwe1058
Putative membrane protein.
  
  
 0.418
chb
Chitin-binding protein/carbohydrate-binding protein.
     
 0.413
lwe0616
Transcriptional regulator, GntR family.
  
    0.409
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.