STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lwe0899ABC transporter, permease protein, putative. (344 aa)    
Predicted Functional Partners:
lwe0900
Putative membrane protein.
 
  
 0.971
trmB
Methyltransferase family protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.566
coaA
Pantothenate kinase.
       0.519
lwe0898
ABC transporter ATP-binding protein.
       0.500
lwe0752
NADH-flavin reductase, putative.
   
    0.495
lwe1170
NADH-dependent reductase, putative.
   
    0.495
lwe0088
Transcriptional regulator, ArsR family.
 
  
 0.443
hsdR
Type I restriction enzyme R protein.
  
    0.421
lwe0904
Transcriptional regulator, TetR family.
 
     0.421
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.