Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
lwe1007TrkA domain protein. (219 aa)    
Predicted Functional Partners:
lwe0976
Cation transporter family protein.
 
 
 0.990
lwe1004
Putative membrane protein.
       0.794
lwe1005
Two-component sensor histidine kinase, putative.
     
 0.779
sun
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.767
lwe1006
DNA-binding response regulator; LuxR family.
       0.738
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.685
moaE
Molybdenum cofactor biosynthesis protein E.
   
    0.635
lwe0922
Conserved hypothetical protein.
     
 0.551
hemD
Uroporphyrinogen III synthase/methyltransferase.
  
  
 0.539
hemD-2
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
    0.517
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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