Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lwe1237Conserved phage-related protein. (367 aa)    
Predicted Functional Partners:
lwe1236
Phage-related structural protein.
  
   0.935
lwe1235
Conserved phage-related protein.
  
   0.917
lwe1228
Phage-related protein, putative.
  
 
 0.895
lwe1225
Phage capsid protein.
  
 
 0.854
lwe1223
Phage portal protein, putative.
  
 
 0.844
lwe1234
Phage-related tail protein.
       0.792
lwe1233
Hypothetical phage-related protein.
       0.737
lwe0713
Hypothetical protein.
  
 
 0.689
lwe1232
Conserved phage-related protein.
       0.665
lwe1240
Phage lysin, putative.
  
    0.635
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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