Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplQ | rplS | lwe2555 | lwe1809 | Ribosomal protein L17. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.993 |
rplQ | rpsB | lwe2555 | lwe1675 | Ribosomal protein L17. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.993 |
rplQ | rpsF | lwe2555 | lwe0035 | Ribosomal protein L17. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.993 |
rplQ | rpsG | lwe2555 | lwe2604 | Ribosomal protein L17. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.995 |
rplQ | rpsI | lwe2555 | lwe2546 | Ribosomal protein L17. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.995 |
rplQ | rpsJ | lwe2555 | lwe2583 | Ribosomal protein L17. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.996 |
rplQ | rpsK | lwe2555 | lwe2557 | Ribosomal protein L17. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.997 |
rplQ | rpsL | lwe2555 | lwe2605 | Ribosomal protein L17. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.996 |
rplQ | rpsO | lwe2555 | lwe1345 | Ribosomal protein L17. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.995 |
rplQ | rpsP | lwe2555 | lwe1816 | Ribosomal protein L17. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.997 |
rplS | rplQ | lwe1809 | lwe2555 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein L17. | 0.993 |
rplS | rpsB | lwe1809 | lwe1675 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.994 |
rplS | rpsF | lwe1809 | lwe0035 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.993 |
rplS | rpsG | lwe1809 | lwe2604 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.994 |
rplS | rpsI | lwe1809 | lwe2546 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.994 |
rplS | rpsJ | lwe1809 | lwe2583 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.994 |
rplS | rpsK | lwe1809 | lwe2557 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.993 |
rplS | rpsL | lwe1809 | lwe2605 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.991 |
rplS | rpsO | lwe1809 | lwe1345 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.993 |
rplS | rpsP | lwe1809 | lwe1816 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.997 |
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