Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
deoRTranscriptional repressor DeoR. (315 aa)    
Predicted Functional Partners:
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
 
   
 0.704
lwe0304
Dihydroxyacetone kinase.
     0.593
lwe2017
PTS system, mannose/fructose/sorbose family, IIA component.
     
 0.557
lwe2018
Sugar isomerase domain protein; Catalyzes the conversion of a range of fructosamine 6- phosphates to glucose 6-phosphate and a free amino acid.
       0.527
lwe2019
Glucosamine--fructose-6-phosphate aminotransferase, putative.
       0.477
lwe2020
PTS system, mannose/fructose/sorbose family, IID component.
       0.468
lwe2021
PTS system, mannose-specific IIC component.
       0.468
pdp
Pyrimidine-nucleoside phosphorylase.
 
   
 0.463
dak1
Dihydroxyacetone kinase, Dak1 subunit.
      0.456
lwe2014
Transcriptional regulator, LacI family.
     
 0.445
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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