Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dgkA | lwe1639 | lwe1479 | lwe1639 | Diacylglycerol kinase. | Membrane-associated phosphatase, putative. | 0.915 |
dgkA | lwe2037 | lwe1479 | lwe2037 | Diacylglycerol kinase. | PAP2 family protein. | 0.917 |
dgkA | mraY | lwe1479 | lwe2051 | Diacylglycerol kinase. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.906 |
lwe1049 | mraY | lwe1049 | lwe2051 | Cell division protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.829 |
lwe1049 | murC | lwe1049 | lwe1621 | Cell division protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family. | UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.814 |
lwe1049 | murD | lwe1049 | lwe2050 | Cell division protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.779 |
lwe1049 | murF | lwe1049 | lwe0849 | Cell division protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family. | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.691 |
lwe1049 | murG | lwe1049 | lwe2049 | Cell division protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.846 |
lwe1049 | pbpB | lwe1049 | lwe2053 | Cell division protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family. | Penicillin-binding protein. | 0.914 |
lwe1639 | dgkA | lwe1639 | lwe1479 | Membrane-associated phosphatase, putative. | Diacylglycerol kinase. | 0.915 |
lwe1639 | lwe2037 | lwe1639 | lwe2037 | Membrane-associated phosphatase, putative. | PAP2 family protein. | 0.920 |
lwe1639 | mraY | lwe1639 | lwe2051 | Membrane-associated phosphatase, putative. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.908 |
lwe2037 | dgkA | lwe2037 | lwe1479 | PAP2 family protein. | Diacylglycerol kinase. | 0.917 |
lwe2037 | lwe1639 | lwe2037 | lwe1639 | PAP2 family protein. | Membrane-associated phosphatase, putative. | 0.920 |
lwe2037 | mraY | lwe2037 | lwe2051 | PAP2 family protein. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.917 |
mraY | dgkA | lwe2051 | lwe1479 | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | Diacylglycerol kinase. | 0.906 |
mraY | lwe1049 | lwe2051 | lwe1049 | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | Cell division protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family. | 0.829 |
mraY | lwe1639 | lwe2051 | lwe1639 | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | Membrane-associated phosphatase, putative. | 0.908 |
mraY | lwe2037 | lwe2051 | lwe2037 | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | PAP2 family protein. | 0.917 |
mraY | murC | lwe2051 | lwe1621 | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.892 |
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