Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dnaD | dnaI | lwe1914 | lwe1573 | DNA replication protein. | Chromosomal replication initiator protein DnaA. | 0.859 |
dnaD | lwe1504 | lwe1914 | lwe1504 | DNA replication protein. | GTPase family protein. | 0.517 |
dnaD | lwe1514 | lwe1914 | lwe1514 | DNA replication protein. | Conserved hypothetical protein; Belongs to the UPF0473 family. | 0.676 |
dnaD | lwe2349 | lwe1914 | lwe2349 | DNA replication protein. | Conserved hypothetical protein. | 0.448 |
dnaD | lwe2461 | lwe1914 | lwe2461 | DNA replication protein. | Helicase family protein. | 0.721 |
dnaD | rpoE | lwe1914 | lwe2510 | DNA replication protein. | DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.670 |
dnaD | rpoZ | lwe1914 | lwe1845 | DNA replication protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.402 |
dnaI | dnaD | lwe1573 | lwe1914 | Chromosomal replication initiator protein DnaA. | DNA replication protein. | 0.859 |
dnaI | lwe1504 | lwe1573 | lwe1504 | Chromosomal replication initiator protein DnaA. | GTPase family protein. | 0.646 |
dnaI | lwe1514 | lwe1573 | lwe1514 | Chromosomal replication initiator protein DnaA. | Conserved hypothetical protein; Belongs to the UPF0473 family. | 0.717 |
dnaI | lwe2349 | lwe1573 | lwe2349 | Chromosomal replication initiator protein DnaA. | Conserved hypothetical protein. | 0.629 |
dnaI | lwe2461 | lwe1573 | lwe2461 | Chromosomal replication initiator protein DnaA. | Helicase family protein. | 0.684 |
dnaI | rpoE | lwe1573 | lwe2510 | Chromosomal replication initiator protein DnaA. | DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.708 |
lwe0518 | lwe1514 | lwe0518 | lwe1514 | CBS domain protein. | Conserved hypothetical protein; Belongs to the UPF0473 family. | 0.440 |
lwe0518 | rpoE | lwe0518 | lwe2510 | CBS domain protein. | DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.621 |
lwe1012 | rpoC | lwe1012 | lwe0228 | Conserved hypothetical protein; Belongs to the UPF0356 family. | RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.756 |
lwe1012 | rpoE | lwe1012 | lwe2510 | Conserved hypothetical protein; Belongs to the UPF0356 family. | DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.739 |
lwe1012 | rpoZ | lwe1012 | lwe1845 | Conserved hypothetical protein; Belongs to the UPF0356 family. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.618 |
lwe1504 | dnaD | lwe1504 | lwe1914 | GTPase family protein. | DNA replication protein. | 0.517 |
lwe1504 | dnaI | lwe1504 | lwe1573 | GTPase family protein. | Chromosomal replication initiator protein DnaA. | 0.646 |
page 1 of 4