STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD7Chromodomain-helicase-DNA-binding protein 7 isoform X1. (3000 aa)    
Predicted Functional Partners:
SSRP1
Structure-specific recognition protein 1.
   
 
 0.680
PROK2
Prokineticin 2.
      
 0.662
CHD8
Chromodomain helicase DNA binding protein 8.
  
 
 
0.632
SUPT16H
FACT complex subunit SPT16.
   
 
 0.627
ENSPCIP00000046034
annotation not available
    
 0.626
DDX6
Probable ATP-dependent RNA helicase DDX6.
   
 0.614
SUPT5H
LOW QUALITY PROTEIN: transcription elongation factor SPT5.
   
 
 0.597
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
   
 0.589
PAICS
Phosphoribosylaminoimidazole carboxylase / phosphoribosylaminoimidazole-succinocarboxamide synthase.
      
 0.584
CTNNB1
LOW QUALITY PROTEIN: catenin beta-1.
    
 0.583
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.