STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASPHAspartyl/asparaginyl beta-hydroxylase isoform X1. (844 aa)    
Predicted Functional Partners:
TRDN
Triadin.
   
0.978
RYR2
LOW QUALITY PROTEIN: ryanodine receptor 2.
   
 
 0.962
CASQ2
Calsequestrin 2.
   
 0.945
CASQ1
Calsequestrin 1.
   
 0.945
F10
Coagulation factor X.
    
 
 0.816
RYR1
Ryanodine receptor 1.
   
 
 0.648
RYR3
Ryanodine receptor 3.
   
 
 0.536
NEFM
LOW QUALITY PROTEIN: neurofilament medium polypeptide.
   
 0.490
NEFL
Neurofilament light polypeptide.
   
 0.490
INA
Internexin neuronal intermediate filament protein, alpha.
   
 0.490
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.