Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ASPHAspartyl/asparaginyl beta-hydroxylase isoform X1. (844 aa)    
Predicted Functional Partners:
TRDN
Triadin.
   
0.991
RYR2
LOW QUALITY PROTEIN: ryanodine receptor 2.
   
 
 0.968
CASQ2
Calsequestrin 2.
   
 0.946
CASQ1
Calsequestrin 1.
   
 0.946
RYR1
Ryanodine receptor 1.
   
 
 0.945
RYR3
Ryanodine receptor 3.
   
 
 0.905
F10
Coagulation factor X.
    
 0.863
F9
Coagulation factor IX (Christmas factor).
    
 0.593
ANLN
Actin-binding protein anillin.
    
   0.588
PSPH
Phosphoserine phosphatase.
      
 0.527
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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