Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DHX34Probable ATP-dependent RNA helicase DHX34 isoform X1. (1137 aa)    
Predicted Functional Partners:
CDC40
Pre-mRNA-processing factor 17.
   
 0.909
CACTIN
Cactin.
    
 0.903
SLU7
Pre-mRNA-processing factor SLU7.
   
 0.900
SYF2
Pre-mRNA-splicing factor SYF2.
    
 0.891
PPIL1
Peptidyl-prolyl cis-trans isomerase-like 1.
   
 0.877
CHERP
Calcium homeostasis endoplasmic reticulum protein isoform X1.
   
 0.849
CCDC12
Coiled-coil domain-containing protein 12.
    
  0.846
ENSPCIP00000016891
annotation not available
   
 0.840
CRNKL1
Crooked neck-like protein 1.
   
 0.834
YJU2
Coiled-coil domain-containing protein 94.
   
 0.830
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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