STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFPQSplicing factor, proline- and glutamine-rich. (698 aa)    
Predicted Functional Partners:
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.663
NUDT21
Cleavage and polyadenylation specificity factor subunit 5.
   
 
 0.602
PTBP2
Polypyrimidine tract-binding protein 2 isoform X1.
   
 
 0.592
CPSF6
Cleavage and polyadenylation specificity factor subunit 6 isoform X1.
   
 
 0.516
FUS
LOW QUALITY PROTEIN: RNA-binding protein FUS.
   
 
 0.506
DAZAP1
DAZ-associated protein 1 isoform X1.
      
 0.442
HNRNPK
LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein K.
   
 
 0.415
HNRNPA1
Heterogeneous nuclear ribonucleoprotein A1 isoform X1.
   
 
 0.401
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.