Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFPQSplicing factor, proline- and glutamine-rich. (698 aa)    
Predicted Functional Partners:
NUDT21
Cleavage and polyadenylation specificity factor subunit 5.
   
 
 0.753
CPSF6
Cleavage and polyadenylation specificity factor subunit 6 isoform X1.
   
 
 0.729
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.690
U2AF2
Splicing factor U2AF 65 kDa subunit isoform X1.
   
 
 0.671
FUS
LOW QUALITY PROTEIN: RNA-binding protein FUS.
   
 
 0.648
PTBP2
Polypyrimidine tract-binding protein 2 isoform X1.
   
 
 0.599
CDC5L
Cell division cycle 5-like protein.
   
 
 0.593
HNRNPU
Heterogeneous nuclear ribonucleoprotein U.
   
 
 0.570
HNRNPK
LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein K.
   
 
 0.568
ENSPCIP00000021010
annotation not available
   
 
 0.538
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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