Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEC23BProtein transport protein Sec23B. (770 aa)    
Predicted Functional Partners:
SEC31A
Protein transport protein Sec31A isoform X1.
   
 0.992
SEC13
Protein SEC13 homolog isoform X1.
   
 0.988
SEC31B
Protein transport protein Sec31B isoform X1.
   
 0.987
SEC24C
LOW QUALITY PROTEIN: protein transport protein Sec24C.
   
0.983
SEC24D
Protein transport protein Sec24D.
   
0.980
SEC24A
SEC24 homolog A, COPII coat complex component.
   
0.972
SEC24B
SEC24 homolog B, COPII coat complex component.
   
0.969
SAR1B
GTP-binding protein SAR1b.
    
 0.944
BET1
Blocked early in transport 1.
    
 0.846
ENSPCIP00000046094
annotation not available
   
 0.840
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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