Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM4PDZ and LIM domain protein 4 isoform X1. (367 aa)    
Predicted Functional Partners:
PDLIM2
PDZ and LIM domain protein 1/2/3/4.
     
0.929
PDLIM1
PDZ and LIM domain protein 1/2/3/4.
  
  
 
0.901
TRIP6
LOW QUALITY PROTEIN: thyroid receptor-interacting protein 6.
   
 
 0.826
CNN3
Calponin-3.
   
 
 0.765
NCKAP1
Nck-associated protein 1 isoform X1.
   
 
 0.754
PTPN13
LOW QUALITY PROTEIN: tyrosine-protein phosphatase non-receptor type 13.
    
 0.739
PDLIM7
PDZ and LIM domain protein 7 isoform X1.
   
 
0.621
LPP
Lipoma-prefererred partner.
   
 
 0.614
PDLIM5
LOW QUALITY PROTEIN: PDZ and LIM domain protein 5.
   
 
 0.575
LDB3
LIM domain-binding protein 3 isoform X1.
    
0.567
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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